Toward creating future medicine based on genome information.


2014

Yamada C, Kondo M, Kishimoto N, Shibata T, Nagai Y, Imanishi T, Oroguchi T, Ishii N, and Nishizaki Y (2014) Association between insulin resistance and plasma amino acid profile in non-diabetic Japanese subjects. Journal of Diabetes Investigation (in press).
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Nagai Y*, Takahashi Y*, and Imanishi T (2014) VaDE: a manually-curated database of reproducible associations between various traits and human genomic polymorphisms. Nucleic Acids Research, Database Issue 2014: gku1037. (*: equal contribution)
[PubMed] [NAR]

Yamada C, Kondo M, Oroguchi T, Ebihara A, Shibata T, Nagai Y, Imanishi T, Ishii N, and Nishizaki Y (2014) Subclinical visceral fat accumulation is a risk for lifestyle-related diseases and progression of atherosclerosis in Japanese adults - Results from a study of 94 healthy volunteers -. Health Evaluation and Promotion 41(4): 518-523.
[HEP]

International Glossina Genome Initiative (2014) Genome Sequence of the Tsetse Fly (Glossina morsitans): Vector of African Trypanosomiasis. Science 344 (6182): 380-386.
[PubMed] [Science]

2013

Nagai Y, and Imanishi T (2013) RAvariome: a genetic risk variants database for rheumatoid arthritis based on assessment of reproducibility between or within human populations. Database 2013: bat073.
[PubMed][Database]

Takenaka Y, Noda AO, Imanishi T, Yamaguchi A, Gojobori T, and Shigeri Y (2013) Computational analysis and functional expression of ancestral copepod luciferase. Gene 528(2): 201-205.

Koyanagi KO, Imanishi T, and Gojobori T (2013) Bi-directional gene pairs in the human genome. In "Encyclopedia of Life Sciences," John Wiley & Sons.

Imanishi T, Nagai Y, Habara T, Yamasaki C, Takeda J, Mikami S, Bando Y, Tojo H, and Nishimura T (2013) Full-length transcriptome-based H-InvDB throws a new light on chromosome-centric proteomics. Journal of Proteome Research, C-HPP Special Issue 12(1): 62-66.

Takeda J, Yamasaki C, Murakami K, Nagai Y, Sera M, Hara Y, Obi N, Habara T, Gojobori T, and Imanishi T (2013) H-InvDB in 2013: an omics study platform for human functional gene and transcript discovery. Nucleic Acids Research, Databases Issue 41(D1): D915-D919.

2012

Gough CA, Homma K, Yamaguchi-Kabata Y, Shimada MK, Chakraborty R, Fujii Y, Iwama H, Minoshima S, Sakamoto S, Sato Y, Suzuki Y, Tada-Umezaki M, Nishikawa K, Imanishi T, and Gojobori T (2012) Prediction of protein-destabilizing polymorphisms by manual curation with protein structure. PLoS One 7(11): e50445.
[PubMed][PLoS One]

Kikugawa S, Nishikata K, Murakami K, Sato Y, Suzuki M, Altaf-Ul-Amin M, Kanaya S, and Imanishi T (2012) PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from H-Invitational protein-protein interactions integrative dataset. BMC Systems Biology 6(Suppl 2): S7.
[PubMed][BMC Systems Biology]

Hara Y, Imanishi T, and Satta Y (2012) Reconstructing the demographic history of the human lineage using whole-genome sequences from human and three great apes. Genome Biology and Evolution 4(11): 1133-1145.
[PubMed][GBE]

Hayashida K, Hara Y, Abe T, Yamasaki C, Toyoda A, Kosuge T, Suzuki Y, Sato Y, Kawashima S, Katayama T, Wakaguri H, Inoue N, Homma K, Tada-Umezaki M, Yagi Y, Fujii Y, Habara T, Kanehisa M, Watanabe H, Ito K, Gojobori T, Sugawara H, Imanishi T, Weir W, Gardner M, Pain A, Shiels B, Hattori M, Nene V, and Sugimoto C (2012) Comparative genome analysis of three eukaryotic parasites with differing abilities of leukocyte transformation reveals key mediators of Theileria-induced leukocyte-transformation. mBio 3(5): e00204-12.
[PubMed][mBio]

Ishibashi M, Noda AO, Sakate R, and Imanishi T (2012) Evolutionary growth process of highly conserved sequences in vertebrate genomes. Gene 504: 1-5.
[PubMed][Gene]

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